RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g29400.1 View Network Show in Genome Browser |
| Other Names | Os06g0489200 |
| Description | surp module family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 16825601-16836210 Nucleotide Length: 2955 |
| Protein-coding | LOC_Os06g29400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g14780 LOC_Os03g45410 LOC_Os02g08360 LOC_Os01g50320 LOC_Os01g34190 LOC_Os02g55000 LOC_Os02g07070 LOC_Os03g61640 LOC_Os05g50900 LOC_Os06g05250 LOC_Os05g05300 More.. |
| Downstream Genes | LOC_Os06g46880 LOC_Os12g39070 LOC_Os12g42140 LOC_Os10g24070 LOC_Os08g08080 LOC_Os07g04700 LOC_Os07g29360 LOC_Os10g34040 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g29400.1 |
| Rice Genome Annotation | LOC_Os06g29400.1 |
| Ricechip | LOC_Os06g29400.1 |
| KEGG | osa:4341077 dosa:Os06t0489200-01 |
| Entrez-Gene | 4341077 |