RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g29430.1 View Network Show in Genome Browser |
| Other Names | Os06g0489500 |
| Description | cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 16852004-16858873 Nucleotide Length: 4773 |
| Protein-coding | LOC_Os06g29430 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g55974 LOC_Os01g51540 LOC_Os02g27340 LOC_Os02g53500 LOC_Os05g45340 LOC_Os01g53070 LOC_Os03g56800 LOC_Os04g48060 LOC_Os05g01440 LOC_Os01g66500 LOC_Os03g57870 More.. |
| Downstream Genes | LOC_Os09g04210 LOC_Os12g19180 LOC_Os12g07720 LOC_Os12g10670 LOC_Os11g13990 LOC_Os08g02670 LOC_Os07g08170 LOC_Os11g39670 LOC_Os08g23730 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g29430.1 |
| Rice Genome Annotation | LOC_Os06g29430.1 |
| Ricechip | LOC_Os06g29430.1 |
| KEGG | osa:4341078 dosa:Os06t0489500-01 |
| Entrez-Gene | 4341078 |