RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g29650.1 View Network Show in Genome Browser |
| Other Names | Os06g0492000 |
| Description | CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 17003628-17010230 Nucleotide Length: 417 |
| Protein-coding | LOC_Os06g29650 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g02750 LOC_Os06g10280 LOC_Os01g57930 LOC_Os03g17020 LOC_Os03g59290 |
| Downstream Genes | LOC_Os07g10600 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5837.1 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00562 rn00564 rn01100 |
| Metacyc Pathways | PHOSLIPSYN2-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g29650.1 |
| Rice Genome Annotation | LOC_Os06g29650.1 |
| Ricechip | LOC_Os06g29650.1 |
| KEGG | osa:4341084 dosa:Os06t0492000-01 |
| Entrez-Gene | 4341084 |