RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g33710.1 View Network Show in Genome Browser |
| Other Names | Os06g0528600 |
| Description | spermidine synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 19614272-19619689 Nucleotide Length: 1164 |
| Protein-coding | LOC_Os06g33710 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g42090 LOC_Os02g39790 LOC_Os06g19680 LOC_Os04g04980 LOC_Os03g63490 LOC_Os01g12570 LOC_Os01g52790 LOC_Os04g25360 LOC_Os03g27930 LOC_Os01g49250 LOC_Os01g40660 More.. |
| Downstream Genes | LOC_Os07g22600 LOC_Os09g37120 LOC_Os10g38850 LOC_Os09g25620 LOC_Os10g17280 LOC_Os09g19560 LOC_Os12g03070 LOC_Os08g33620 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn00330 rn00480 rn01100 rn00410 |
| Metacyc Pathways | BSUBPOLYAMSYN-PWY ARGSPECAT-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g33710.1 |
| Rice Genome Annotation | LOC_Os06g33710.1 |
| Ricechip | LOC_Os06g33710.1 |
| KEGG | osa:4341195 dosa:Os06t0528600-01 |
| Entrez-Gene | 4341195 |