RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g35540.1 View Network Show in Genome Browser |
| Other Names | Os06g0548000 |
| Description | aminotransferase, classes I and II, domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 20727092-20731771 Nucleotide Length: 1392 |
| Protein-coding | LOC_Os06g35540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g46070 LOC_Os05g49880 LOC_Os01g61380 LOC_Os03g16920 LOC_Os04g48850 LOC_Os01g09700 LOC_Os03g51740 LOC_Os06g03990 LOC_Os03g19280 LOC_Os04g39700 LOC_Os01g49190 More.. |
| Downstream Genes | LOC_Os08g33720 LOC_Os11g47760 LOC_Os09g28050 LOC_Os10g11200 LOC_Os07g42600 LOC_Os10g41150 LOC_Os11g31640 LOC_Os07g29320 LOC_Os10g25130 LOC_Os11g35040 LOC_Os07g43700 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g35540.1 |
| Rice Genome Annotation | LOC_Os06g35540.1 |
| Ricechip | LOC_Os06g35540.1 |
| KEGG | osa:4341252 dosa:Os06t0548000-01 |
| Entrez-Gene | 4341252 |