RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g36170.1 View Network Show in Genome Browser |
| Other Names | Os06g0555500 |
| Description | initiator tRNA phosphoribosyl transferase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 21167582-21171548 Nucleotide Length: 1635 |
| Protein-coding | LOC_Os06g36170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os03g21550 LOC_Os03g18510 LOC_Os04g46450 |
| Downstream Genes | LOC_Os12g41400 LOC_Os12g07740 LOC_Os07g48300 LOC_Os07g49220 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1854-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g36170.1 |
| Rice Genome Annotation | LOC_Os06g36170.1 |
| Ricechip | LOC_Os06g36170.1 |
| KEGG | osa:4341283 dosa:Os06t0555500-01 |
| Entrez-Gene | 4341283 |