RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g37410.1 View Network Show in Genome Browser |
| Other Names | Os06g0570900 |
| Description | helix-loop-helix DNA-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 22119339-22123157 Nucleotide Length: 1698 |
| Protein-coding | LOC_Os06g37410 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g48670 LOC_Os02g42350 LOC_Os06g11280 LOC_Os06g11240 LOC_Os06g11210 LOC_Os03g02030 LOC_Os06g11200 LOC_Os06g11290 LOC_Os04g55720 LOC_Os04g52280 LOC_Os01g01960 More.. |
| Downstream Genes | LOC_Os06g38470 LOC_Os09g31190 LOC_Os10g29470 LOC_Os07g44140 LOC_Os07g44110 LOC_Os07g11870 LOC_Os07g43470 LOC_Os10g28040 LOC_Os07g11970 LOC_Os07g23570 LOC_Os06g44460 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g37410.1 |
| Rice Genome Annotation | LOC_Os06g37410.1 |
| Ricechip | LOC_Os06g37410.1 |
| KEGG | dosa:Os06t0570900-00 |