RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g37440.1 View Network Show in Genome Browser |
| Other Names | Os06g0571400 |
| Description | elongation factor 1-gamma, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 22135546-22139442 Nucleotide Length: 1251 |
| Protein-coding | LOC_Os06g37440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g67134 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os03g58430 LOC_Os04g02820 LOC_Os02g32030 LOC_Os04g51630 LOC_Os01g27630 LOC_Os03g04240 LOC_Os05g41110 More.. |
| Downstream Genes | LOC_Os09g02700 LOC_Os07g08660 LOC_Os07g42300 LOC_Os07g46750 LOC_Os08g13690 LOC_Os12g38000 LOC_Os07g10720 LOC_Os11g06750 LOC_Os08g09940 LOC_Os11g29190 LOC_Os08g41810 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g37440.1 |
| Rice Genome Annotation | LOC_Os06g37440.1 |
| Ricechip | LOC_Os06g37440.1 |
| KEGG | osa:4341354 dosa:Os06t0571400-01 |
| Entrez-Gene | 4341354 |