RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g38510.1 View Network Show in Genome Browser |
| Other Names | Os06g0583900 |
| Description | pectate lyase precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 22821117-22823478 Nucleotide Length: 1347 |
| Protein-coding | LOC_Os06g38510 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g51900 LOC_Os02g26290 LOC_Os02g04030 LOC_Os03g05770 |
| Downstream Genes | LOC_Os06g38520 LOC_Os06g43410 LOC_Os07g14340 LOC_Os08g12520 LOC_Os06g45160 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00040 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g38510.1 |
| Rice Genome Annotation | LOC_Os06g38510.1 |
| Ricechip | LOC_Os06g38510.1 |
| KEGG | osa:4341389 dosa:Os06t0583900-01 |
| Entrez-Gene | 4341389 |