RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g38980.1 View Network Show in Genome Browser |
| Other Names | Os06g0589700 |
| Description | polyadenylate-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 23135703-23141103 Nucleotide Length: 2013 |
| Protein-coding | LOC_Os06g38980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g20010 LOC_Os02g48340 LOC_Os02g52140 LOC_Os02g15310 LOC_Os03g03140 LOC_Os05g30530 LOC_Os05g08360 LOC_Os04g51630 LOC_Os01g67134 LOC_Os06g11620 LOC_Os03g56020 More.. |
| Downstream Genes | LOC_Os06g41790 LOC_Os11g45590 LOC_Os11g06750 LOC_Os12g07010 LOC_Os07g36940 LOC_Os07g10250 LOC_Os11g41820 LOC_Os07g08330 LOC_Os11g04070 LOC_Os07g42450 LOC_Os12g03880 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g38980.1 |
| Rice Genome Annotation | LOC_Os06g38980.1 |
| Ricechip | LOC_Os06g38980.1 |
| KEGG | osa:4341408 dosa:Os06t0589700-01 |
| Entrez-Gene | 4341408 |