RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g39050.1 View Network Show in Genome Browser |
| Other Names | Os06g0590500 |
| Description | syntaxin, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 23185057-23186296 Nucleotide Length: 927 |
| Protein-coding | LOC_Os06g39050 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g73230 LOC_Os02g25580 LOC_Os05g48020 LOC_Os06g02570 LOC_Os06g04450 LOC_Os04g18030 LOC_Os05g26890 LOC_Os03g14690 LOC_Os04g44810 LOC_Os03g25390 LOC_Os02g24080 More.. |
| Downstream Genes | LOC_Os10g10500 LOC_Os10g23090 LOC_Os12g35620 LOC_Os12g09089 LOC_Os10g20240 LOC_Os08g14640 LOC_Os08g17600 LOC_Os09g11970 LOC_Os11g06740 LOC_Os08g44930 LOC_Os09g11990 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g39050.1 |
| Rice Genome Annotation | LOC_Os06g39050.1 |
| Ricechip | LOC_Os06g39050.1 |
| KEGG | osa:4341413 dosa:Os06t0590500-01 |
| Entrez-Gene | 4341413 |