RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g39060.1 View Network Show in Genome Browser |
| Other Names | Os06g0590600 |
| Description | glucan endo-1,3-beta-glucosidase precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 23187192-23189067 Nucleotide Length: 1452 |
| Protein-coding | LOC_Os06g39060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g08310 LOC_Os04g57750 LOC_Os05g46330 LOC_Os01g25460 LOC_Os06g08380 LOC_Os01g55040 LOC_Os03g64310 LOC_Os03g64300 LOC_Os04g55110 |
| Downstream Genes | LOC_Os09g09460 LOC_Os06g40890 LOC_Os09g36440 LOC_Os12g43700 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g39060.1 |
| Rice Genome Annotation | LOC_Os06g39060.1 |
| Ricechip | LOC_Os06g39060.1 |
| KEGG | osa:4341414 dosa:Os06t0590600-01 |
| Entrez-Gene | 4341414 |