RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os06g39240.1 View Network Show in Genome Browser
Other Names	Os06g0592500
Description	endothelial differentiation-related factor 1, putative, expressed
Gene Attributes	Chromosome: Chr6 CDS Coordinates (5'-3'): 23293234-23294073 Nucleotide Length: 468
Protein-coding	LOC_Os06g39240

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009719	response to endogenous stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003674	molecular_function	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005730	nucleolus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g15960 LOC_Os05g48810 LOC_Os02g21970 LOC_Os02g54130 LOC_Os02g10640 LOC_Os03g18690 LOC_Os02g28980 LOC_Os02g56000 LOC_Os06g07630 LOC_Os02g54340 LOC_Os04g21660 More..
Downstream Genes	LOC_Os08g39150 LOC_Os11g38260 LOC_Os09g38730 LOC_Os07g49150 LOC_Os06g40560 LOC_Os06g39870 LOC_Os09g35790 LOC_Os07g43740

miRNA Regulations
miRNAs	osa-miR5485

Database Links
Gramene	LOC_Os06g39240.1
Rice Genome Annotation	LOC_Os06g39240.1
Ricechip	LOC_Os06g39240.1
KEGG	osa:4341420 dosa:Os06t0592500-01
Entrez-Gene	4341420