RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os06g39640.1 View Network Show in Genome Browser
Other Names	Os06g0597400
Description	PINHEAD, putative, expressed
Gene Attributes	Chromosome: Chr6 CDS Coordinates (5'-3'): 23540782-23547199 Nucleotide Length: 2922
Protein-coding	LOC_Os06g39640

Gene Ontology Classification
GO	Name	Type	Code
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0009790	embryo development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0006412	translation	Biological Process	IEA
GO:0003723	RNA binding	Molecular Function	IEA
GO:0008135	translation factor activity, nucleic acid binding	Molecular Function	IEA
GO:0005737	cytoplasm	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g02970 LOC_Os03g38740 LOC_Os02g58490 LOC_Os04g47870 LOC_Os02g45070 LOC_Os03g41080 LOC_Os02g56210 LOC_Os03g58600 LOC_Os03g47820 LOC_Os02g07310 LOC_Os03g01200 More..
Downstream Genes	LOC_Os06g51310 LOC_Os07g09020 LOC_Os07g10770 LOC_Os07g05720 LOC_Os10g35180 LOC_Os12g01360 LOC_Os11g01330 LOC_Os10g34430 LOC_Os07g28850 LOC_Os09g25090 LOC_Os06g42850 More..

miRNA Regulations
miRNAs	osa-miR1877

Reference
PubMed	12000455

Database Links
Gramene	LOC_Os06g39640.1
Rice Genome Annotation	LOC_Os06g39640.1
Ricechip	LOC_Os06g39640.1
KEGG	osa:9269490 dosa:Os06t0597400-00
Entrez-Gene	9269490