RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g39906.1 View Network Show in Genome Browser |
| Other Names | Os06g0601000 |
| Description | homeobox domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 23732555-23734536 Nucleotide Length: 951 |
| Protein-coding | LOC_Os06g39906 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g04510 LOC_Os03g43420 LOC_Os04g52100 LOC_Os03g25960 LOC_Os01g61320 LOC_Os03g61220 LOC_Os03g43430 LOC_Os02g50280 LOC_Os05g51150 LOC_Os01g59510 LOC_Os01g48300 More.. |
| Downstream Genes | LOC_Os11g32880 LOC_Os08g09270 LOC_Os08g29110 LOC_Os08g37700 LOC_Os07g42440 LOC_Os08g36140 LOC_Os08g25624 LOC_Os07g32590 LOC_Os06g44840 LOC_Os07g43560 LOC_Os11g02450 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g39906.1 |
| Rice Genome Annotation | LOC_Os06g39906.1 |
| Ricechip | LOC_Os06g39906.1 |
| KEGG | osa:4341453 dosa:Os06t0601000-01 |
| Entrez-Gene | 4341453 |