RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g40080.1 View Network Show in Genome Browser |
| Other Names | Os06g0603000 |
| Description | heme oxygenase 1, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 23853714-23858061 Nucleotide Length: 870 |
| Protein-coding | LOC_Os06g40080 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0040007 | growth | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009605 | response to external stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g09340 |
| Downstream Genes | LOC_Os12g08180 LOC_Os12g04220 LOC_Os11g04460 LOC_Os08g10330 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3979-3p osa-miR2102-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 |
| Reference | |
|---|---|
| PubMed | 19675157 22751314 10849355 22829206 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g40080.1 |
| Rice Genome Annotation | LOC_Os06g40080.1 |
| Ricechip | LOC_Os06g40080.1 |
| KEGG | osa:4341462 dosa:Os06t0603000-01 |
| Entrez-Gene | 4341462 |