RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g40120.1 View Network Show in Genome Browser |
| Other Names | Os06g0603600 |
| Description | SPX domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 23875408-23879965 Nucleotide Length: 888 |
| Protein-coding | LOC_Os06g40120 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g01310 LOC_Os04g52200 LOC_Os05g51490 LOC_Os01g40340 LOC_Os03g22890 LOC_Os05g22920 LOC_Os02g50370 LOC_Os01g65220 LOC_Os02g44810 LOC_Os01g66520 LOC_Os03g05720 More.. |
| Downstream Genes | LOC_Os07g10350 LOC_Os10g25110 LOC_Os11g19250 LOC_Os10g42320 LOC_Os07g01920 LOC_Os12g03822 LOC_Os11g03990 LOC_Os07g47590 LOC_Os12g36950 LOC_Os11g07500 LOC_Os10g30090 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Reference | |
|---|---|
| PubMed | 19000161 20149131 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g40120.1 |
| Rice Genome Annotation | LOC_Os06g40120.1 |
| Ricechip | LOC_Os06g40120.1 |
| KEGG | osa:4341465 dosa:Os06t0603600-01 |
| Entrez-Gene | 4341465 |