RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os06g40330.1 View Network Show in Genome Browser
Other Names	Os06g0605750,Os06g0605600
Description	MYB family transcription factor, putative, expressed
Gene Attributes	Chromosome: Chr6 CDS Coordinates (5'-3'): 24005099-24012308 Nucleotide Length: 2049
Protein-coding	LOC_Os06g40330

Gene Ontology Classification
GO	Name	Type	Code
GO:0008150	biological_process	Biological Process	IEA
GO:0008150	biological_process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0008219	cell death	Biological Process	IEA
GO:0008219	cell death	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0040007	growth	Biological Process	IEA
GO:0040007	growth	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0009719	response to endogenous stimulus	Biological Process	IEA
GO:0009719	response to endogenous stimulus	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os02g43180
Downstream Genes	LOC_Os07g35790

miRNA Regulations
miRNAs	osa-miR159c osa-miR159f osa-miR159a.1 osa-miR159b osa-miR159d osa-miR2931 osa-miR159e osa-miR414

Database Links
Gramene	LOC_Os06g40330.1
Rice Genome Annotation	LOC_Os06g40330.1
Ricechip	LOC_Os06g40330.1
KEGG	osa:4341475 dosa:Os06t0605750-00 dosa:Os06t0605600-01