RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
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Locus Name | LOC_Os06g40600.1 View Network Show in Genome Browser |
Other Names | Os06g0608300 |
Description | elongation factor, putative, expressed |
Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 24206615-24212569 Nucleotide Length: 2994 |
Protein-coding | LOC_Os06g40600 |
Gene Ontology Classification | ||||
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GO | Name | Type | Code | |
GO:0009056 | catabolic process | Biological Process | IEA | |
GO:0030154 | cell differentiation | Biological Process | IEA | |
GO:0009790 | embryo development | Biological Process | IEA | |
GO:0007275 | multicellular organismal development | Biological Process | IEA | |
GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
GO:0009791 | post-embryonic development | Biological Process | IEA | |
GO:0000003 | reproduction | Biological Process | IEA | |
GO:0006412 | translation | Biological Process | IEA | |
GO:0016787 | hydrolase activity | Molecular Function | IEA | |
GO:0000166 | nucleotide binding | Molecular Function | IEA | |
GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
GO:0005618 | cell wall | Cellular Component | IEA | |
GO:0005654 | nucleoplasm | Cellular Component | IEA | |
GO:0005886 | plasma membrane | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
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Upstream Genes | LOC_Os03g17010 LOC_Os03g13760 LOC_Os02g01250 LOC_Os01g72890 LOC_Os04g20220 LOC_Os02g13990 LOC_Os01g59140 LOC_Os03g25980 LOC_Os01g43170 LOC_Os02g01740 LOC_Os02g12570 More.. |
Downstream Genes | LOC_Os09g20590 LOC_Os07g07220 LOC_Os12g41400 LOC_Os12g07740 LOC_Os10g35550 LOC_Os10g34520 LOC_Os07g10256 LOC_Os07g07610 LOC_Os10g06130 LOC_Os07g32430 LOC_Os08g37960 More.. |
miRNA Regulations | |
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miRNAs | osa-miR6248 |
Database Links | |
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Gramene | LOC_Os06g40600.1 |
Rice Genome Annotation | LOC_Os06g40600.1 |
Ricechip | LOC_Os06g40600.1 |
KEGG | osa:4341492 dosa:Os06t0608300-01 |
Entrez-Gene | 4341492 |