RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g40890.1 View Network Show in Genome Browser |
| Other Names | Os06g0611500 |
| Description | polygalacturonase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 24384025-24386078 Nucleotide Length: 1278 |
| Protein-coding | LOC_Os06g40890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g42210 LOC_Os06g08310 LOC_Os06g39060 LOC_Os05g51660 LOC_Os03g61530 LOC_Os04g55110 |
| Downstream Genes | LOC_Os12g36040 LOC_Os09g26360 LOC_Os09g09460 |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-1081 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g40890.1 |
| Rice Genome Annotation | LOC_Os06g40890.1 |
| Ricechip | LOC_Os06g40890.1 |
| KEGG | osa:4341515 dosa:Os06t0611500-01 |
| Entrez-Gene | 4341515 |