RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g40910.1 View Network Show in Genome Browser |
| Other Names | Os06g0611600 |
| Description | cytidine/deoxycytidylate deaminase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 24388281-24388871 Nucleotide Length: 591 |
| Protein-coding | LOC_Os06g40910 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g55974 LOC_Os05g38170 LOC_Os03g62870 LOC_Os02g47860 LOC_Os02g47020 |
| Downstream Genes | LOC_Os09g04210 LOC_Os07g46630 LOC_Os06g48230 LOC_Os10g42780 LOC_Os10g35960 LOC_Os08g41790 LOC_Os09g32820 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 rn00983 |
| Metacyc Pathways | PWY0-181 DRIBOPMET-PWY P1-PWY PWY0-163 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g40910.1 |
| Rice Genome Annotation | LOC_Os06g40910.1 |
| Ricechip | LOC_Os06g40910.1 |
| KEGG | dosa:Os06t0611600-00 |