RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g40940.2 View Network Show in Genome Browser |
| Other Names | Os06g0611900 |
| Description | glycine dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 24399538-24406050 Nucleotide Length: 2679 |
| Protein-coding | LOC_Os06g40940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g53230 LOC_Os02g07410 LOC_Os01g51410 LOC_Os01g52010 LOC_Os01g51980 LOC_Os05g44210 LOC_Os03g52840 LOC_Os05g50930 LOC_Os03g03360 LOC_Os01g56930 LOC_Os01g54540 More.. |
| Downstream Genes | LOC_Os10g37180 LOC_Os06g45670 LOC_Os08g38720 LOC_Os12g32250 LOC_Os08g39300 LOC_Os10g32550 LOC_Os12g37640 LOC_Os07g38970 LOC_Os08g36530 LOC_Os07g12150 LOC_Os06g49110 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1432-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g40940.2 |
| Rice Genome Annotation | LOC_Os06g40940.2 |
| Ricechip | LOC_Os06g40940.2 |
| KEGG | osa:4341516 dosa:Os06t0611900-01 |
| Entrez-Gene | 4341516 |