RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g40950.1 View Network Show in Genome Browser |
| Other Names | Os06g0612200 |
| Description | DNA-directed RNA polymerase I subunit RPA1, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 24425492-24427132 Nucleotide Length: 1062 |
| Protein-coding | LOC_Os06g40950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g54840 LOC_Os03g44484 LOC_Os03g28960 LOC_Os05g22830 LOC_Os03g60400 LOC_Os01g61814 LOC_Os04g16820 LOC_Os01g73430 LOC_Os02g05880 LOC_Os05g22860 LOC_Os04g41490 More.. |
| Downstream Genes | LOC_Os10g35290 LOC_Os08g07480 LOC_Os11g29190 LOC_Os12g01710 LOC_Os11g04730 LOC_Os10g20990 LOC_Os12g04510 LOC_Os08g44450 LOC_Os07g43310 LOC_Os10g08930 LOC_Os08g44380 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 rn00240 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g40950.1 |
| Rice Genome Annotation | LOC_Os06g40950.1 |
| Ricechip | LOC_Os06g40950.1 |
| KEGG | osa:4341517 dosa:Os06t0612200-01 |
| Entrez-Gene | 4341517 |