RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
---|---|
Locus Name | LOC_Os06g40960.1 View Network Show in Genome Browser |
Other Names | Os06g0612300 |
Description | ZOS6-05 - C2H2 zinc finger protein, expressed |
Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 24453131-24456495 Nucleotide Length: 1338 |
Protein-coding | LOC_Os06g40960 |
Gene Ontology Classification | ||||
---|---|---|---|---|
GO | Name | Type | Code | |
GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
GO:0009058 | biosynthetic process | Biological Process | IEA | |
GO:0030154 | cell differentiation | Biological Process | IEA | |
GO:0016049 | cell growth | Biological Process | IEA | |
GO:0016043 | cellular component organization | Biological Process | IEA | |
GO:0009908 | flower development | Biological Process | IEA | |
GO:0007275 | multicellular organismal development | Biological Process | IEA | |
GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
GO:0009856 | pollination | Biological Process | IEA | |
GO:0005488 | binding | Molecular Function | IEA | |
GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
GO:0005634 | nucleus | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
---|---|
Upstream Genes | LOC_Os05g05860 LOC_Os04g52270 LOC_Os03g17590 LOC_Os01g70310 LOC_Os01g27730 LOC_Os02g56740 LOC_Os04g08340 LOC_Os06g16260 LOC_Os05g23260 LOC_Os06g38470 LOC_Os06g19470 More.. |
Downstream Genes | LOC_Os11g40500 LOC_Os08g01930 LOC_Os11g05562 LOC_Os08g44480 LOC_Os11g43640 LOC_Os08g45240 LOC_Os07g29330 LOC_Os07g38950 LOC_Os07g41090 LOC_Os11g32100 LOC_Os09g39540 More.. |
Database Links | |
---|---|
Gramene | LOC_Os06g40960.1 |
Rice Genome Annotation | LOC_Os06g40960.1 |
Ricechip | LOC_Os06g40960.1 |
KEGG | osa:4341518 dosa:Os06t0612300-01 |
Entrez-Gene | 4341518 |