RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g41500.1 View Network Show in Genome Browser |
| Other Names | Os06g0619200 |
| Description | D-mannose binding lectin family protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 24877424-24879410 Nucleotide Length: 1863 |
| Protein-coding | LOC_Os06g41500 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0030246 | carbohydrate binding | Molecular Function | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05630 LOC_Os04g56450 LOC_Os06g33549 LOC_Os02g55560 LOC_Os04g37904 LOC_Os02g15594 LOC_Os03g18150 LOC_Os04g52000 LOC_Os02g08364 LOC_Os05g50970 LOC_Os02g38780 More.. |
| Downstream Genes | LOC_Os06g48300 LOC_Os07g32380 LOC_Os06g44210 LOC_Os10g39540 LOC_Os11g13820 LOC_Os09g38550 LOC_Os09g32810 LOC_Os09g30100 LOC_Os07g49040 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR319a-3p.2-3p osa-miR319b |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g41500.1 |
| Rice Genome Annotation | LOC_Os06g41500.1 |
| Ricechip | LOC_Os06g41500.1 |