RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g41990.1 View Network Show in Genome Browser |
| Other Names | Os06g0625400 |
| Description | M16 domain containing zinc peptidase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 25200276-25210534 Nucleotide Length: 3741 |
| Protein-coding | LOC_Os06g41990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g44916 LOC_Os01g53700 LOC_Os02g52390 LOC_Os01g57073 LOC_Os02g55940 LOC_Os06g07896 LOC_Os01g37825 |
| Downstream Genes | LOC_Os12g34550 LOC_Os07g38280 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00480 rn00720 rn01100 rn01120 |
| Metacyc Pathways | TCA ANARESP1-PWY P105-PWY |
| Reference | |
|---|---|
| PubMed | 20097911 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g41990.1 |
| Rice Genome Annotation | LOC_Os06g41990.1 |
| Ricechip | LOC_Os06g41990.1 |
| KEGG | osa:4341569 dosa:Os06t0625400-01 |
| Entrez-Gene | 4341569 |