RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g42560.1 View Network Show in Genome Browser |
| Other Names | Os06g0632200 |
| Description | tryptophan synthase beta chain 2, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 25590233-25594488 Nucleotide Length: 1464 |
| Protein-coding | LOC_Os06g42560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g58320 LOC_Os03g58300 LOC_Os03g58290 LOC_Os03g58260 LOC_Os02g16630 LOC_Os03g11660 LOC_Os01g59920 LOC_Os05g47640 LOC_Os04g46930 LOC_Os01g74650 LOC_Os03g50510 More.. |
| Downstream Genes | LOC_Os07g08430 LOC_Os12g42980 LOC_Os09g08130 LOC_Os08g23150 LOC_Os06g48620 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn00920 rn01100 rn01120 rn00400 rn01110 |
| Metacyc Pathways | CYSTSYN-PWY TRPSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g42560.1 |
| Rice Genome Annotation | LOC_Os06g42560.1 |
| Ricechip | LOC_Os06g42560.1 |
| KEGG | osa:4341584 dosa:Os06t0632200-02 |
| Entrez-Gene | 4341584 |