RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g43590.3 View Network Show in Genome Browser |
| Other Names | Os06g0643300 |
| Description | SNF7 domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 26215500-26218666 Nucleotide Length: 618 |
| Protein-coding | LOC_Os06g43590 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0040007 | growth | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g01250 LOC_Os02g38300 LOC_Os01g18280 LOC_Os01g01350 LOC_Os06g40620 LOC_Os02g01740 LOC_Os01g08970 LOC_Os06g35814 LOC_Os01g31470 LOC_Os05g08970 LOC_Os02g06490 More.. |
| Downstream Genes | LOC_Os09g09480 LOC_Os09g03600 LOC_Os09g30418 LOC_Os09g30412 LOC_Os08g39140 LOC_Os12g02830 LOC_Os11g03060 LOC_Os08g27850 LOC_Os07g13530 LOC_Os12g37630 LOC_Os07g01870 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Reference | |
|---|---|
| PubMed | 19473328 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g43590.3 |
| Rice Genome Annotation | LOC_Os06g43590.3 |
| Ricechip | LOC_Os06g43590.3 |
| KEGG | osa:4341638 dosa:Os06t0643300-01 |
| Entrez-Gene | 4341638 |