RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g43690.1 View Network Show in Genome Browser |
| Other Names | Os06g0644600 |
| Description | WD repeat-containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 26303837-26312412 Nucleotide Length: 2712 |
| Protein-coding | LOC_Os06g43690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g50660 LOC_Os03g05720 LOC_Os03g19960 LOC_Os05g44320 LOC_Os03g57280 LOC_Os01g43020 LOC_Os04g56670 LOC_Os06g30320 LOC_Os03g61560 LOC_Os04g02000 LOC_Os03g22350 More.. |
| Downstream Genes | LOC_Os12g07300 LOC_Os07g41190 LOC_Os07g25440 LOC_Os09g18320 LOC_Os12g36950 LOC_Os12g03822 LOC_Os11g03990 LOC_Os08g05880 LOC_Os08g23730 LOC_Os09g19560 LOC_Os12g04010 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR156a osa-miR156b-5p osa-miR156c-5p osa-miR156d osa-miR156e osa-miR156f-5p osa-miR156g-5p osa-miR156h-5p osa-miR156i osa-miR156j-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g43690.1 |
| Rice Genome Annotation | LOC_Os06g43690.1 |
| Ricechip | LOC_Os06g43690.1 |
| KEGG | osa:9270402 dosa:Os06t0644600-01 |
| Entrez-Gene | 9270402 |