RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g43790.1 View Network Show in Genome Browser |
| Other Names | Os06g0645901,Os06g0645700,Os06g0645800 |
| Description | transcription initiation factor TFIID subunit 1, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 26360281-26374490 Nucleotide Length: 5475 |
| Protein-coding | LOC_Os06g43790 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g45410 LOC_Os05g28010 LOC_Os01g32750 LOC_Os01g48810 LOC_Os01g46020 LOC_Os01g63940 LOC_Os04g42990 LOC_Os03g14720 LOC_Os02g02510 LOC_Os05g32600 LOC_Os01g49680 More.. |
| Downstream Genes | LOC_Os10g10990 LOC_Os12g39070 LOC_Os06g44030 LOC_Os10g29660 LOC_Os06g51220 LOC_Os07g22950 LOC_Os09g36440 LOC_Os09g26180 LOC_Os09g24440 LOC_Os08g25060 LOC_Os11g28350 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g43790.1 |
| Rice Genome Annotation | LOC_Os06g43790.1 |
| Ricechip | LOC_Os06g43790.1 |
| KEGG | osa:4341655 osa:9266475 dosa:Os06t0645901-00dosa:Os06t0645700-01dosa:Os06t0645800-01 |