RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os06g43850.1 View Network Show in Genome Browser
Other Names	Os06g0646500
Description	ATP synthase F1, delta subunit family protein, putative, expressed
Gene Attributes	Chromosome: Chr6 CDS Coordinates (5'-3'): 26408087-26410937 Nucleotide Length: 678
Protein-coding	LOC_Os06g43850

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006810	transport	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0005215	transporter activity	Molecular Function	IEA
GO:0016020	membrane	Cellular Component	IEA
GO:0005739	mitochondrion	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA
GO:0009536	plastid	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g49190 LOC_Os05g47980 LOC_Os04g16740 LOC_Os03g48471 LOC_Os01g08350 LOC_Os06g02980 LOC_Os06g39740 LOC_Os03g55874 LOC_Os05g35320 LOC_Os01g58000 LOC_Os03g50540 More..
Downstream Genes	LOC_Os10g17280 LOC_Os09g08910 LOC_Os07g31300 LOC_Os10g21240 LOC_Os12g23630 LOC_Os09g08880 LOC_Os07g32880 LOC_Os12g10570 LOC_Os12g19430 LOC_Os06g50000 LOC_Os07g39710 More..

miRNA Regulations
miRNAs	osa-miR2919

Pathways
KEGG Pathways	rn01100 rn00680 rn00190 rn00195
Metacyc Pathways	PWY-6126

Database Links
Gramene	LOC_Os06g43850.1
Rice Genome Annotation	LOC_Os06g43850.1
Ricechip	LOC_Os06g43850.1
KEGG	osa:4341660 dosa:Os06t0646500-01
Entrez-Gene	4341660