RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g44010.1 View Network Show in Genome Browser |
| Other Names | Os06g0649000 |
| Description | WRKY28, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 26509919-26511699 Nucleotide Length: 1191 |
| Protein-coding | LOC_Os06g44010 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g08440 LOC_Os03g08330 LOC_Os04g02910 LOC_Os03g47280 LOC_Os01g70790 LOC_Os03g01740 LOC_Os02g15810 LOC_Os04g48850 LOC_Os04g09920 LOC_Os03g53020 LOC_Os04g43680 More.. |
| Downstream Genes | LOC_Os08g37660 LOC_Os09g17152 LOC_Os10g25230 LOC_Os09g25760 LOC_Os12g08130 LOC_Os09g33710 LOC_Os06g46950 |
| Reference | |
|---|---|
| PubMed | 15618416 21726398 21961049 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g44010.1 |
| Rice Genome Annotation | LOC_Os06g44010.1 |
| Ricechip | LOC_Os06g44010.1 |
| KEGG | osa:4341678 dosa:Os06t0649000-01 |
| Entrez-Gene | 4341678 |