RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g44230.1 View Network Show in Genome Browser |
| Other Names | Os06g0652000 |
| Description | DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 26680140-26690056 Nucleotide Length: 2862 |
| Protein-coding | LOC_Os06g44230 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g42490 LOC_Os03g11720 LOC_Os04g53210 LOC_Os02g46320 LOC_Os03g38020 LOC_Os03g57220 LOC_Os03g45920 LOC_Os03g29570 |
| Downstream Genes | LOC_Os07g19030 LOC_Os07g07010 LOC_Os10g25674 LOC_Os11g08940 LOC_Os07g05820 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2275a osa-miR2275b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 rn00240 |
| Reference | |
|---|---|
| PubMed | 15509842 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g44230.1 |
| Rice Genome Annotation | LOC_Os06g44230.1 |
| Ricechip | LOC_Os06g44230.1 |
| KEGG | osa:4341695 dosa:Os06t0652000-01 |
| Entrez-Gene | 4341695 |