RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os06g44620.1 View Network Show in Genome Browser
Other Names	Os06g0656500
Description	AMP-binding domain containing protein, expressed
Gene Attributes	Chromosome: Chr6 CDS Coordinates (5'-3'): 26943094-26949889 Nucleotide Length: 1680
Protein-coding	LOC_Os06g44620

Gene Ontology Classification
GO	Name	Type	Code
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009607	response to biotic stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0019748	secondary metabolic process	Biological Process	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005575	cellular_component	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os05g03174 LOC_Os05g32110 LOC_Os03g12250 LOC_Os02g21890 LOC_Os05g38720 LOC_Os01g62020 LOC_Os03g64320 LOC_Os02g41780 LOC_Os05g32500 LOC_Os02g15230 LOC_Os06g06980 More..
Downstream Genes	LOC_Os12g01560 LOC_Os11g01570 LOC_Os07g43990 LOC_Os07g06680 LOC_Os06g49320 LOC_Os07g14850 LOC_Os12g25690 LOC_Os10g33270 LOC_Os07g27810 LOC_Os12g32620 LOC_Os09g15330 More..

miRNA Regulations
miRNAs	osa-miR5077

Pathways
KEGG Pathways	rn00130 rn00360 rn00940 rn01100 rn01110
Metacyc Pathways	PWY1F-FLAVSYN PWY-361 PWY-5754 PWY-6435 PWY-6673 PWY-6320 PWY-1121 PWY-5135

Reference
PubMed	21807887

Database Links
Gramene	LOC_Os06g44620.1
Rice Genome Annotation	LOC_Os06g44620.1
Ricechip	LOC_Os06g44620.1
KEGG	osa:4341718 dosa:Os06t0656500-01
Entrez-Gene	4341718