RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g44620.2 View Network Show in Genome Browser |
| Other Names | Os06g0656500 |
| Description | AMP-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 26945152-26949889 Nucleotide Length: 1338 |
| Protein-coding | LOC_Os06g44620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g03174 LOC_Os05g32110 LOC_Os03g12250 LOC_Os02g21890 LOC_Os05g38720 LOC_Os01g62020 LOC_Os03g64320 LOC_Os02g41780 LOC_Os05g32500 LOC_Os02g15230 LOC_Os06g06980 More.. |
| Downstream Genes | LOC_Os12g01560 LOC_Os11g01570 LOC_Os07g43990 LOC_Os07g06680 LOC_Os06g49320 LOC_Os07g14850 LOC_Os12g25690 LOC_Os10g33270 LOC_Os07g27810 LOC_Os12g32620 LOC_Os09g15330 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5077 osa-miR2928 |
| Reference | |
|---|---|
| PubMed | 21807887 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g44620.2 |
| Rice Genome Annotation | LOC_Os06g44620.2 |
| Ricechip | LOC_Os06g44620.2 |
| KEGG | osa:4341718 dosa:Os06t0656500-01 |
| Entrez-Gene | 4341718 |