RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g44970.1 View Network Show in Genome Browser |
| Other Names | Os06g0660200 |
| Description | auxin efflux carrier component, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 27200806-27204762 Nucleotide Length: 1893 |
| Protein-coding | LOC_Os06g44970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0009606 | tropism | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g60230 LOC_Os04g38570 LOC_Os05g38610 LOC_Os03g18820 |
| Downstream Genes | LOC_Os08g09190 LOC_Os09g31478 LOC_Os09g38130 LOC_Os09g38210 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR6248 osa-miR2931 osa-miR1861e osa-miR1861k osa-miR1861m osa-miR5544 |
| Reference | |
|---|---|
| PubMed | 21777365 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g44970.1 |
| Rice Genome Annotation | LOC_Os06g44970.1 |
| Ricechip | LOC_Os06g44970.1 |
| KEGG | osa:4341736 dosa:Os06t0660200-01 |
| Entrez-Gene | 4341736 |