RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g45500.1 View Network Show in Genome Browser |
| Other Names | Os06g0665800 |
| Description | copper-transporting ATPase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 27517100-27523604 Nucleotide Length: 3012 |
| Protein-coding | LOC_Os06g45500 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g37080 LOC_Os04g48410 LOC_Os02g32814 LOC_Os05g45820 LOC_Os06g37150 LOC_Os01g66240 LOC_Os03g29170 LOC_Os05g33390 LOC_Os06g18790 LOC_Os05g42060 LOC_Os04g44354 More.. |
| Downstream Genes | LOC_Os09g20090 LOC_Os08g10480 LOC_Os09g32952 LOC_Os09g20000 LOC_Os10g18530 LOC_Os09g34230 LOC_Os08g38160 LOC_Os07g13800 LOC_Os10g18480 LOC_Os10g18510 LOC_Os07g08350 More.. |
| Reference | |
|---|---|
| PubMed | 16154798 17827266 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g45500.1 |
| Rice Genome Annotation | LOC_Os06g45500.1 |
| Ricechip | LOC_Os06g45500.1 |
| KEGG | osa:4341778 dosa:Os06t0665800-01 |
| Entrez-Gene | 4341778 |