RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os06g45650.1 View Network Show in Genome Browser
Other Names	Os06g0667266,Os06g0667200
Description	OsMADS30 - MADS-box family gene with MIKCc type-box, expressed
Gene Attributes	Chromosome: Chr6 CDS Coordinates (5'-3'): 27637555-27641578 Nucleotide Length: 666
Protein-coding	LOC_Os06g45650

Gene Ontology Classification
GO	Name	Type	Code
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0009908	flower development	Biological Process	IEA
GO:0009908	flower development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0019748	secondary metabolic process	Biological Process	IEA
GO:0019748	secondary metabolic process	Biological Process	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g54160 LOC_Os06g08380 LOC_Os01g55040 LOC_Os04g53930 LOC_Os06g27890 LOC_Os04g35700 LOC_Os03g03610 LOC_Os02g35010
Downstream Genes	LOC_Os07g01820 LOC_Os11g40100 LOC_Os12g31350 LOC_Os11g10100 LOC_Os09g12800 LOC_Os07g19560 LOC_Os07g37510 LOC_Os06g51270 LOC_Os07g37530

Database Links
Gramene	LOC_Os06g45650.1
Rice Genome Annotation	LOC_Os06g45650.1
Ricechip	LOC_Os06g45650.1
KEGG	osa:4341786 dosa:Os06t0667266-00 dosa:Os06t0667200-00