RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g46400.1 View Network Show in Genome Browser |
| Other Names | Os06g0677700 |
| Description | ATCPSF30/CPSF30, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 28151360-28156784 Nucleotide Length: 1998 |
| Protein-coding | LOC_Os06g46400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g51520 LOC_Os03g08860 LOC_Os02g39720 LOC_Os02g05660 LOC_Os02g40460 LOC_Os02g02970 LOC_Os06g08840 LOC_Os02g54770 LOC_Os03g60600 LOC_Os03g17710 LOC_Os05g02880 More.. |
| Downstream Genes | LOC_Os10g39820 LOC_Os10g29560 LOC_Os09g01640 LOC_Os09g37720 LOC_Os08g01070 LOC_Os10g11034 LOC_Os06g48210 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g46400.1 |
| Rice Genome Annotation | LOC_Os06g46400.1 |
| Ricechip | LOC_Os06g46400.1 |
| KEGG | osa:4341840 dosa:Os06t0677700-00 |
| Entrez-Gene | 4341840 |