RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g46410.1 View Network Show in Genome Browser |
| Other Names | Os06g0677800 |
| Description | auxin response factor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 28158507-28164559 Nucleotide Length: 2754 |
| Protein-coding | LOC_Os06g46410 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g61350 LOC_Os01g02040 LOC_Os05g39240 LOC_Os01g61550 LOC_Os01g61510 |
| Downstream Genes | LOC_Os06g50860 LOC_Os08g31460 LOC_Os08g37904 LOC_Os12g13290 LOC_Os09g27970 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g46410.1 |
| Rice Genome Annotation | LOC_Os06g46410.1 |
| Ricechip | LOC_Os06g46410.1 |
| KEGG | osa:4341841 dosa:Os06t0677800-01 |
| Entrez-Gene | 4341841 |