RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g46560.1 View Network Show in Genome Browser |
| Other Names | Os06g0679400 |
| Description | myb-like DNA-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 28270166-28272933 Nucleotide Length: 1344 |
| Protein-coding | LOC_Os06g46560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008219 | cell death | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g52840 LOC_Os06g27850 LOC_Os03g15120 |
| Downstream Genes | LOC_Os12g37690 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR159d osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g46560.1 |
| Rice Genome Annotation | LOC_Os06g46560.1 |
| Ricechip | LOC_Os06g46560.1 |
| KEGG | osa:4341850 dosa:Os06t0679400-01 |
| Entrez-Gene | 4341850 |