RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g47150.1 View Network Show in Genome Browser |
| Other Names | Os06g0685700 |
| Description | auxin response factor 18, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 28586445-28590358 Nucleotide Length: 2103 |
| Protein-coding | LOC_Os06g47150 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0040007 | growth | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g06840 LOC_Os05g01710 LOC_Os01g25820 |
| Downstream Genes | LOC_Os09g17600 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR160a-5p osa-miR160b-5p osa-miR160c-5p osa-miR160d-5p osa-miR160e-5p osa-miR160f-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g47150.1 |
| Rice Genome Annotation | LOC_Os06g47150.1 |
| Ricechip | LOC_Os06g47150.1 |
| KEGG | osa:4341882 dosa:Os06t0685700-01 |
| Entrez-Gene | 4341882 |