RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g47210.1 View Network Show in Genome Browser |
| Other Names | Os06g0686500 |
| Description | oligopeptidase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 28620993-28628006 Nucleotide Length: 2124 |
| Protein-coding | LOC_Os06g47210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g09170 LOC_Os04g40650 LOC_Os01g57460 LOC_Os03g60460 LOC_Os02g50230 LOC_Os02g45650 LOC_Os04g35060 LOC_Os03g62110 LOC_Os02g12650 LOC_Os04g41140 LOC_Os03g06740 More.. |
| Downstream Genes | LOC_Os09g19790 LOC_Os07g06980 LOC_Os12g19090 LOC_Os08g30810 LOC_Os09g36440 LOC_Os09g38440 LOC_Os10g28000 LOC_Os10g35450 LOC_Os09g19800 LOC_Os12g07220 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g47210.1 |
| Rice Genome Annotation | LOC_Os06g47210.1 |
| Ricechip | LOC_Os06g47210.1 |
| KEGG | osa:4341884 dosa:Os06t0686500-01 |
| Entrez-Gene | 4341884 |