RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g47830.1 View Network Show in Genome Browser |
| Other Names | Os06g0693300 |
| Description | RPA2C - Putative single-stranded DNA binding complex subunit 2, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 28946879-28950601 Nucleotide Length: 1293 |
| Protein-coding | LOC_Os06g47830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g53680 LOC_Os02g46130 LOC_Os03g38980 LOC_Os01g06020 LOC_Os03g25130 LOC_Os02g53500 LOC_Os02g04700 LOC_Os02g56130 LOC_Os02g55410 LOC_Os05g02040 LOC_Os03g08640 More.. |
| Downstream Genes | LOC_Os11g29380 LOC_Os07g37720 LOC_Os07g30200 LOC_Os07g37710 LOC_Os08g25060 LOC_Os11g36390 LOC_Os12g07720 LOC_Os11g40150 LOC_Os06g50910 LOC_Os10g26280 LOC_Os11g28350 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR167h-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g47830.1 |
| Rice Genome Annotation | LOC_Os06g47830.1 |
| Ricechip | LOC_Os06g47830.1 |
| KEGG | osa:9266781 dosa:Os06t0693300-01 |
| Entrez-Gene | 9266781 |