RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g47840.1 View Network Show in Genome Browser |
| Other Names | Os06g0693500 |
| Description | ZOS6-08 - C2H2 zinc finger protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 28954541-28957840 Nucleotide Length: 1200 |
| Protein-coding | LOC_Os06g47840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22350 LOC_Os02g02360 LOC_Os02g49270 LOC_Os03g19960 LOC_Os03g22890 LOC_Os01g13730 LOC_Os05g11550 LOC_Os06g14670 LOC_Os01g54870 LOC_Os02g26850 LOC_Os02g44810 More.. |
| Downstream Genes | LOC_Os11g01420 LOC_Os12g01430 LOC_Os07g46760 LOC_Os10g10434 LOC_Os09g19560 LOC_Os09g18320 LOC_Os09g30210 LOC_Os09g37860 LOC_Os12g42370 LOC_Os10g42320 LOC_Os10g01540 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5542 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g47840.1 |
| Rice Genome Annotation | LOC_Os06g47840.1 |
| Ricechip | LOC_Os06g47840.1 |
| KEGG | osa:4341920 dosa:Os06t0693500-01 |
| Entrez-Gene | 4341920 |