RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g47940.1 View Network Show in Genome Browser |
| Other Names | Os06g0694500 |
| Description | nifU, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 28993796-28995033 Nucleotide Length: 660 |
| Protein-coding | LOC_Os06g47940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g54020 LOC_Os04g21320 LOC_Os03g51030 LOC_Os05g22730 LOC_Os02g44630 LOC_Os03g46410 LOC_Os04g45600 LOC_Os03g17660 LOC_Os03g50030 LOC_Os02g53400 LOC_Os01g70400 More.. |
| Downstream Genes | LOC_Os09g31970 LOC_Os08g40180 LOC_Os11g03390 LOC_Os09g36520 LOC_Os10g40580 LOC_Os08g05490 LOC_Os12g05650 LOC_Os08g42100 LOC_Os10g13700 LOC_Os11g47730 LOC_Os08g42080 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g47940.1 |
| Rice Genome Annotation | LOC_Os06g47940.1 |
| Ricechip | LOC_Os06g47940.1 |
| KEGG | osa:4341928 dosa:Os06t0694500-01 |
| Entrez-Gene | 4341928 |