RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g48060.1 View Network Show in Genome Browser |
| Other Names | Os06g0695800 |
| Description | ABC transporter, ATP-binding protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29072350-29076031 Nucleotide Length: 1041 |
| Protein-coding | LOC_Os06g48060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g47580 LOC_Os05g33270 LOC_Os04g43070 |
| Downstream Genes | LOC_Os07g30170 LOC_Os07g12890 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR818a osa-miR818b osa-miR818c osa-miR818d osa-miR818e |
| Pathways | |
|---|---|
| KEGG Pathways | rn00710 rn01100 rn01120 |
| Metacyc Pathways | CALVIN-PWY |
| Reference | |
|---|---|
| PubMed | 19244140 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g48060.1 |
| Rice Genome Annotation | LOC_Os06g48060.1 |
| Ricechip | LOC_Os06g48060.1 |
| KEGG | osa:4341938 dosa:Os06t0695800-01 |
| Entrez-Gene | 4341938 |