RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g48290.1 View Network Show in Genome Browser |
| Other Names | Os06g0698200 |
| Description | homeobox associated leucine zipper, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29198270-29199356 Nucleotide Length: 771 |
| Protein-coding | LOC_Os06g48290 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g04870 LOC_Os02g14840 LOC_Os01g55200 LOC_Os02g17970 LOC_Os06g04850 LOC_Os06g07830 LOC_Os02g55970 LOC_Os01g45990 LOC_Os01g11250 LOC_Os02g02424 LOC_Os01g48170 More.. |
| Downstream Genes | LOC_Os08g04270 LOC_Os08g04290 LOC_Os07g07910 LOC_Os10g23090 LOC_Os10g26500 LOC_Os10g39120 LOC_Os06g48630 LOC_Os12g01500 LOC_Os11g01490 LOC_Os08g32080 LOC_Os07g14340 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3979-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g48290.1 |
| Rice Genome Annotation | LOC_Os06g48290.1 |
| Ricechip | LOC_Os06g48290.1 |
| KEGG | dosa:Os06t0698200-00 |