RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g48300.1 View Network Show in Genome Browser |
| Other Names | Os06g0698300 |
| Description | protein phosphatase 2C, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29208086-29210947 Nucleotide Length: 984 |
| Protein-coding | LOC_Os06g48300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g32660 LOC_Os01g26280 LOC_Os06g22810 LOC_Os03g02680 LOC_Os05g06990 LOC_Os06g05520 LOC_Os01g47470 LOC_Os05g51560 LOC_Os04g30040 LOC_Os05g20150 LOC_Os05g25370 More.. |
| Downstream Genes | LOC_Os06g49170 LOC_Os10g09550 LOC_Os10g01390 LOC_Os10g33650 LOC_Os10g35450 LOC_Os09g29510 LOC_Os09g16950 LOC_Os09g29520 LOC_Os06g49260 LOC_Os12g38860 LOC_Os09g15700 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2091-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g48300.1 |
| Rice Genome Annotation | LOC_Os06g48300.1 |
| Ricechip | LOC_Os06g48300.1 |
| KEGG | osa:4341949 dosa:Os06t0698300-01 |
| Entrez-Gene | 4341949 |