RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g48510.1 View Network Show in Genome Browser |
| Other Names | Os06g0698785 |
| Description | choline monooxygenase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29347847-29352146 Nucleotide Length: 1233 |
| Protein-coding | LOC_Os06g48510 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g59110 LOC_Os03g05310 LOC_Os02g54980 LOC_Os02g32120 LOC_Os04g32660 LOC_Os06g43790 LOC_Os05g47560 LOC_Os02g32730 LOC_Os01g12810 LOC_Os02g19150 LOC_Os03g31490 More.. |
| Downstream Genes | LOC_Os07g37030 LOC_Os06g49040 LOC_Os09g04440 LOC_Os12g32970 LOC_Os11g08670 LOC_Os07g06660 LOC_Os07g01860 LOC_Os10g25030 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR821a osa-miR821b osa-miR821c |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY1F-353 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g48510.1 |
| Rice Genome Annotation | LOC_Os06g48510.1 |
| Ricechip | LOC_Os06g48510.1 |
| KEGG | osa:9272377 dosa:Os06t0698785-01 |
| Entrez-Gene | 9272377 |